I have encountered two issues which I feel is worth mentions.
1) The first issues which i just encountered today is, when i logged on today (11/23/2017) I automatically spawns in the Safari zone (which has not happened before now), which by itself is not an issue, however when I move over to the main server my Pokedex was only displaying the Pokemon that I had caught in the safari zone and even refused to recognized any caught Pokemon i had in my inventory from before today. I'm not sure if there is some command that allows to toggle between the two but i would appreciate some help to understand this.
2) The second issues i have is far stranger and happened a couple of days ago. I'm not sure when it occurred but one of my Pokemon (a lv 34 Slugma) started acting strangely. By strangely I mean that i was unable to switch to or summon him to/during battle and the Pokeball did not appear in the healing machine, however the icon was visible during in my inventory and just earlier that day I had no issue with him. When i attempted to re-log the Slugma disappeared entirely not in my inventory or in-game computer storage (or Pokebank). The only thing thing that I can think as a possible reason for this is that,at some point (most likely before the Pokemon disappeared) I suffered a computer crash that required be to hard restart my computer (by holding down the button) right as I was in the middle of a Pokemon battle (not sure if the Slugma was the one I was battling with but it is possible), when i logged back in, the Pokemon was still there but said it was in battle. I did not intially connect these two events because I had no issue with using the Slugma initially but eventually I experienced the abnormalities with no immediate cause to warrant the change. I can say that the Pokemon i was battle is no longer there however (not sure when it disappeared though)